Annotation Tool
VAST
VAST supports manual voxel-level annotation for reconstruction at the tissue, cellular or ultrastructural level. While edits made in CAVE are globally visible to the entire community, manual edits in VAST remain private to the user who performs them.
Fish1 VAST files
Complete Dataset
Full Fish1 Dataset
These are the VAST files corresponding to the full EM volume and the static snapshot automatic segmentation (Ouroboros). Load all these in VAST as image layers.
EM volume
Petkova_ZFish1_EM_Clahe23.vsvi
Petkova_ZFish1_EM_Clahe23.vsvi
Supervoxels
Petkova_ZFish1_Base_Segmentation.vsvi
Petkova_ZFish1_Base_Segmentation.vsvi
Ouroboros
Petkova_ZFish1_Agglo_Segmentation.vsvi
Petkova_ZFish1_Agglo_Segmentation.vsvi
Example Manual Annotations
OC1 Reconstructions
Manual labeling of the Otic Canal Neuromast 1 (OC1) of the zebrafish. Load these in VAST as segmentation layers.