FishExplorer
FishExplorer is an interface designed for anatomical mapping and community-led data enrichment. By providing a shared coordinate space, it enables high-fidelity reconstructions to be placed into a broader anatomical context for comparative analysis.
Beyond the manual refinement of individual circuits, we have integrated our tools with FishExplorer to facilitate cross-fish comparative analysis. We established a pipeline to register and upload proofread reconstructions from CAVE snapshots into this platform, bridging our dataset with other major zebrafish repositories.
Fish1 reconstructions are integrated into FishExplorer (Vohra et al. 2025), a shared coordinate space bridging our dataset with others such as mapZebrain and Boulanger-Weill et al. (2025). This enables cross-fish comparative analysis and direct neuron downloads across multiple registered anatomical spaces.
Connected Repositories
mapZebrain
A comprehensive atlas for spatial registration and analysis of zebrafish brain data.
Visit mapZebrainBoulanger-Weill et al.
Functional and structural dataset integration for comparative circuit dissection.
Read Paper (2025)